79 Phụ lục 12

Kết quả so với trình tự của CP-PRSV trên Genebank

CLUSTAL X (1.83) multiple sequence alignment

3
AJ012649 TCCAAGAATGAAGCTGTGGATGCTGGTTTGGATGAAAAACTCAAAGAAAAAGAAAAACAG 60

3
AJ012649 AAAGAAAAAGAAAAACAAAAAGAAAAAGAAAAAGACAATGCTAGTGACGGAAATGATGTG 120

3
AJ012649 TCGACTAGCACAAGAACTGGAGAGAAAGATAGAGATGTCAATGTCGGGACCAGTGGAACT 180

3 1 CCGAGAATAAAATCATTTACTGACAAGATGATTTTACCGAAAATTAAAGGA 51
AJ012649 181 TTCACGGTTCCGAGAATTAAATCATTCACTGATAAGATGATTCTACCAAGAATTAAGGGA 240
190******** ******** ***** ********* **** * ****** ***

3 AAAACTGTCCTTAATTTTAAATCATCTTCTTCAGTATAATCCGCAACAAATTGATATCTC 111
AJ012649 AAGACTGTCCTTAATTT-AAATCATCTTCTTCAGTATAATCCGCAACAAATTGACATTTC 299
** ************** ************************************ ** **

3 AAACACTCGTGCCACTCAAACTCAATTCGAAAAGTGGTATGAGGGAGTGAGGAATGATTA 171
AJ012649 TAACACTCGTGCCACTCAGTCACAATTTGAGAAATGGTATGAGGGAGTGAGGAATGATTA 359
***************** * ***** ** ** **************************

AJ012649 TCCTGGGTATGCGCAACTGAATACTCGCGCTGGTGTGTTTGTCGAGCTCGACTCGACCTT

3
AJ012649 GTTTCACCTTATAGTACTAAATAAGCATTAGAATACAGTGTGGCTGTGCCACCACTTCTA

3
AJ012649 TTTTACAGTGAGGGTAGCCCTCCGTGCTTTTAGTATTATTCGAGTTCTCTGAGTCTCCAT

3
AJ012649 ACAGTGTGGGTGGCCCACGTGTTATTT

ALIGN 396 NU 80 Phụ lục 13

Kết quả so với genome của PRSV trên Genebank CLUSTAL X (1.83) multiple sequence alignment 3
AY231130 1 AAATAAAACATCTCAACACAACATAATCAAAAGCATTTCAACAAACATCAACTTATCTCA 60

3
AY231130 TTTTAAATTGTTATAGTAAGCGACAATGTCTTCTTTGTATACTTTGCGAGCAGCAGCTCA 120


3
AY231130 GATTGGGGAAATTCCTGTCCCACTTGTCGTCATCAAAGAGACGCCAGTTATCAGTGGTGT 780

3
AY231130 GAACGGAACTTTGAACTCAACTGGTTTCTCACTTGAAGCTGAGATTACAAAACTGGTGGA 840

3
AY231130 GAAGGAAGTCTCTCAAGAAGAGGTTAAAGAAGCAGTGCATCTGGCACTCGAAGTTGGTAA 900 3
AY231130 CGAGATTGCTGAGAAGAAGCCTGAACTCAAGCTAATACCATACTGGAGTGCTAGCCTTGA 960

3
AY231130 GTTGCACAAGAGAATTCGTAAGCATAAGGAGCATGCTAAGATTGCAGCAATTCAAGTCCA 1020

3
AY231130 GAAGGAAAGAGAAAAGAACCAAAAGATATTCTCAATTCTAGAGTCGAAGCTCAACTTAAA 1080

3
AY231130 ATCCAGGAGGAGAAATCAAACTGTGGTCTGTGACAAAAGAGGCACACTTAAATGGAAAAC 1140

3
AY231130 CCGGCAAGGTTACAAGAAGAGTAGACTAATGCAACAAGCGAGTGACTCTGTTGTCACTCA 1200 81
AY231130 AAAATTTTGGCTCGGTTTTAATAGGGCTTTTCTACGGCATAGAAAACCAACGGATCACAC 1800

3
AY231130 TTGCACGTCTGATATGGATGTTACAATGTGTGGGGAGGTAGCAGCTCTGGCAACTATAAT 1860

3
AY231130 TTTGTTTCCGTGCCACAAAATAACTTGCAACACTTGCATGAGCAGAGTGAAGGGAAGAGT 1920

3
AY231130 AATTGACGAAGTTGGTGAGGATTTGAATTCTGAGCTTGAACGTTTACGTGAAACTCTTTC 1980

3
AY231130 TTCATATGGAGGGTCATTCGGACATGTTTCAACATTACTTGATCAAATGAATAGAGTTTT 2040

3
AY231130 GAATGCGCGGAACACAAACGATGGAGCTTTTAAAGAGATTGCGAAGAAGATTGATGCAAA 2100

3
AY231130 GAAAGAGAGTCCTTGGACTCACATGACAACTATCAACAACACGCTCATCAAAGGTTCGCT 2160

3
AY231130 AGCAACTGGTTACGAATTTGAAAGAGCGTCTGATAGTCTCCTAGAGATTGTGAGATGGCA 2220

3
AY231130 TCTCAAAAGGACAGAATCAATAAAAGCTGGCAGCGTTGAGAGTTTTAGAAATAAGCGTTC 2280

3
AY231130 TGGGAAAGCTCACTTCAACCCAGCTCTTACGTGTGATAATCAGTTGGATAGGAATGGTAA 2340

3

AY231130 GAGAGTTCGCGACCTCGTGGGTTCAAAACTTGGAGAGTGGCCAACGATGTTGGATGTCGC 2880

3
AY231130 AACATGCGCAAATCAGCTGATAATCTTTCATCCTGACGCAGCCAATGCAGAATTGCCGCG 2940

3
AY231130 AATTTTAGTGGACCATCGACAGAAAACAATGCATGTTATTGACTCTTTTGGTTCCGTGGA 3000

3
AY231130 TTCTGGATATCATATGTTGAAGGCAAACACAGTTAATCAGCTAATCCAATTCGCTAGAGA 3060

3
AY231130 GCCACTCGATAGTGAAATGAAGCACTACATCGTTGGTGGAGAGTTTGACCCAACTACTAA 3120

3
AY231130 CTGCTTGCATCAGTTGATTCGTGTCATCTACAAGCCTCATGAACTCCGGAACTTGCTCAG 3180

3
AY231130 GAATGAACCGTACCTGATTGTGATTGCATTGATGTCACCAAGTGTACTTTTGACTTTGTT 3240

3
AY231130 CAATAGTGGTGCGATTGAGCACGCGTTGAATTACTGGATCAAAAGAGATCAAGATGTTGT 3300

3
AY231130 TGAGGTCATTGTTTTGGTGGAGCAATTATGCAGGAAAGTTACACTTGCTAGAACAATCCT 3360

3
AY231130 GGAGCAATTTAATGAGATTCGTCAAAATGCGAGAGATATACATGAGCTAATGGATCGAAA 3420

3


3
AY231130 AGAAATGGAAAGACAGAAAGATTTTGATCGTCTGGAGGCTCTATACGCTGAATTGTGCAT 4020 3
AY231130 TAAGAGCGGTGAGCAACCAACTGCTGAAGAATTTATTGATTTTGTGAAGGAGCGTGAGCC 4080

3
AY231130 AAGGCTTAAGGATCAAGCTTACAATTTAATACACATACCAGTGATTCATCAAGCAAAATC 4140

3
AY231130 GGACAATGAGAAAAAGCTCGAGCAAGTCATTGCATTCATTACATTAATTTTAATGATGAT 4200

3
AY231130 CGATGTTGATAAGAGTGATTGTGTCTATAGAATCCTAAATAAATTTAAAGGCGTGATAAA 4260

3
AY231130 ATCTTGCGATGCAAATGTTTATCACCAGTCTTTAGATGACATTCGGGATTTCTATGAAGA 4320

3
AY231130 CAAGCAGTTGACTATTGATTTCGATATCACTGGAGAAAATCAGATCAATCGAGGACCTAT 4380

3
AY231130 AGACGTTACGTTTGAGAAATGGTGGGACAATCAATTGTCCAATAACAACACAATTGGTCA 4440

3
AY231130 TTATCGAATCGGGGGAACGTTTGTTGAATTTTCACGAAGTACTGCAGCAACTGTGGCTAG 4500

3

3
AY231130 AGGCTACTTAGTCACTAAAATCGATGGAAGAACGATGAAAGTTGGAAAAACTGAAATTTC 5160

3
AY231130 CACTAGTGGCACAAAATCCAAGAAGCATTTCATAGTTGCCACGAATATCATTGAGAATGG 5220

3
AY231130 CGTCACACTTGACATAGAAGCCGTTATAGATTTTGGGATGAAAGTTGTACCTGAGATGGA 5280

3 84 AY231130 TTCAGATAATCGCATGATTCGGTACTCAAAGCAAGCGATCAGTTTTGGAGAGAGAATTCA 5340

3
AY231130 AAGACTTGGCCGAGTGGGAAGACATAAAGAGGGGATTGCACTTAGAATTGGGCACACAGA 5400 3
AY231130 GAAAGGTATCCAAGAAATTCCAGAGATGGCAGCTACTGAAGCAGCTTTTCTGAGCTTCAC 5460

3
AY231130 GTATGGCTTGCCTGTTATGACTCACAATGTAGGGTTAAGCTTGCTTAAAAATTGCACTGT 5520

3
AY231130 GAGACAAGCACGCACAATGCATCAGTATGAACTGAGCCCATTCTTTACACAAAATTTGGT 5580



3
AY231130 TGTTTACCATCAAAGTGTTGATGGAGTCAAGCACATAAAGCGAGAGTTGGGCTTGAAGGG 6240

3
AY231130 AATTTGGGATGGTTCATTGATGATCAAGGATGCGATTGTATGCGGTTTCACAATGGCTGG 6300

3
AY231130 CGGTGCGATGCTTTTGTACCAACACTTTCGTGATAGGCTTACAAATGTTCATGTGTTTCA 6360

3
AY231130 CCAAGGTTTCTCTGCGCGACAGAGACAAAAGTTAAGATTTAAGTCAGCAGCAAATGCTAA 6420
3
AY231130 GCTTGGTCGAGAGGTCTATGGAGATGATGGAACAATTGAGCACTACTTTGGAGAGGCGTA 6480

3
AY231130 CACGAAGAAAGGAAACAAGAAAGGAAAGATGCATGGCATGGGCGTTAAAACGAGGAAATT 6540

3
AY231130 TGTTGCGACATATGGATTTAAACCGGAGGATTACTCGTATGTGCGGTACTTGGATCCTTT 6600

3
AY231130 AACAGGTGAGACTTTAGATGAAAGCCCACAGACTGATATCTCAATGGTGCAAGAACATTT 6660

3 85
3
AY231130 GATAGGTGTTGATTACCAAGAGAATCATATCGCGAGCAAAGTGTCTGAAACTTCTATCAT 7320

3
AY231130 AGTGAGGGCACGGGAGATTTTGGATGCCACTGGATTTCCACGAATGACGGTGATTGCGG 7380

3
AY231130 CAATCCATTAGTTAGTGTTTCAGATGGTTTTATTGTTGGCTTGCATAGTCTGTCGACATC 7440

3
AY231130 AACTGGAGATCAAAATTTCTTCGCTAAAATACCCGCACAATTTGAAGAAAAGGTCCTGAA 7500

3
AY231130 GAAGATTGATGATTTAACTTGGAGCAAACACTGGAGCTATAATATTAATGAACTGAGTTG 7560 3
AY231130 GGGGGCTCTCAAAGTGTGGGAAAGTCGACCCGAAGCAATTTTTAACGCGCAAAAGGAAGT 7620

3
AY231130 TAATCAATTGAATGCCTTCGAGCAAAGTGGTAGTCGTTGGCTCTTTGACAAACTACACGG 7680

3
AY231130 CAATTTGAAAGGAGTAAGTTCCGCTCCTAGCAATTTGGTGACAAAGCACGTTGTTAAAGG 7740

3
AY231130 TATTTGTCCTCTCTTTAGAAACTATCTCGAGTGTGATAAAGAGGCGAAAGCTTTCTTTAG 7800

3
AY231130 TCCACTTATGGGTCACTACATGAAGAGTGTTCTGAGCAAGGAAGCATACATTAAGGATTT 7860


3
AY231130 GTTTCTGAAGAAGTTTCCTGAAGGCTGGGTGTATTGTGATGCAGATGGCTCCCAGTTCGA 8400

3
AY231130 TAGCTCATTGACACCATACTTGTTAAATGCTGTGTTGTCAATCCGGTTATGGGCAATGGA 8460

3
AY231130 GGATTGGGATATTGGAGAGCAAATGCTTAAGAATTTGTATGGGGAAATTACTTACACGCC 8520

3
AY231130 AATATTGACACCGGATGGGACAATCGTCAAGAAGTTCAAAGGAAATAATAGTGGTCAACC 8580

3
AY231130 TTCGACAGTTGTTGATAATACATTAATGGTTTTAATCACAATGTATTACGCACTACGGAA 8640

3
AY231130 GATTGGTTATGATACGAAGGCTCAAGAAGACATGTGTGTATTTTATATCAATGGTGATGA 8700

3
AY231130 CCTCTGTATTGCAATTCACCCGGATCATGAGCATGTTCTTGACTCATTCTCTAGTTCATT 8760

3
AY231130 TGCTGAGCTTGGGCTTAAGTATGACTTCACACAAAGGCACCGGAATAAACAGGATTTGTG 8820

3
AY231130 GTTTATGTCGCATCGAGGTATTCTGATCGATGACATTTACATTCCGAAACTTGAACCTGA 8880

3
AY231130 GCGAATTGTTGCAATTCTTGAATGGGACAAATCTAAGCTTCCAGAGCATCGATTAGAGGC 8940

3 1 CCGAGAATAAAATCATTTACTGACAAGATGATTTT 35
AY231130 CGGGACCAGTGGAACTTTCACGGTTCCGAGAATTAAATCATTCACTGATAAGATGATTCT 9480
******** ******** ***** ********* *
9444
3 ACCGAAAATTAAAGGAAAAACTGTCCTTAATTTTAAATCATCTTCTTCAGTATAATCCGC 95
AY231130 ACCAAGAATTAAGGGAAAGACTGTCCTTAATTT-AAATCATCTTCTTCAGTATAATCCGC 9539
*** * ****** ***** ************** **************************

3 AACAAATTGATATCTCAAACACTCGTGCCACTCAAACTCAATTCGAAAAGTGGTATGAGG 155
AY231130 AACAAATTGACATTTCTAACACTCGTGCCACTCAGTCACAATTTGAGAAATGGTATGAGG 9599
********** ** ** ***************** * ***** ** ** **********

3 GAGTGAGGAATGATTACGGTCTCAACGATAACGAAATGCAAGTG-ATGTTAAACGGTTTG 214
AY231130 GAGTGAGGAATGATTATGGTCTGAATGATAATGAAATGCAAGTG-ATGCTGAATGGCTTG 9658
**************** ***** ** ***** ************ *** * ** ** ***

3 ATGGTTTGGTGTATTGAAAATGGTACATCTCCAGACTTATCTGGTGTTTGGGTAATGATG 274
AY231130 ATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTTTGGGTTATGATG 9718
************** ** ****************** **************** ******
3 GATGGGGAAACACAAGTTGATTATCCCATTAAGCCTTTAATTGAACATGCAACTCCTTCG 334
AY231130 GATGGGGAAATTCAAGTTGACTATCCAATCAAGCCTTTAATTGAGCATGCTACCCCGTCA 9778
********** ******** ***** ** ************** ***** ** ** **

3 TTTAGGCAAATCATGGCTCACTTCAGTAACGCGGCAGAGGCATACATCGCAAAGAGGAAT 394
AY231130 TTTAGGCAGATTATGGCTCACTTTAGTAACGCGGCAGAAGCATATATTGCAAAGAGAAAT 9838
******** ** *********** ************** ***** ** ******** ***
3 395 G
AY2311309839 GCCACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTC 9898
*
3